Bacon & Sausage Egg Muffins Recipe: The Best Breakfast

Looking for a quick, satisfying breakfast that’s packed with protein and flavor? These bacon and sausage egg muffins are your new morning go-to. Whether you’re rushing out the door, prepping meals for the week, or following a low-carb or keto diet, these savory egg muffin cups are a perfect grab-and-go solution. Made with crispy bacon, seasoned sausage, and fluffy eggs baked in a muffin tin, they’re easy to customize and even easier to love.

In this post, you’ll discover how to make these delicious breakfast muffins, tips for storing and reheating, and creative variations to suit your taste or dietary needs. Let’s dive in and upgrade your mornings with this meal prep-friendly recipe that’s big on taste and low on effort.

Why Bacon and Sausage Egg Muffins Are the Perfect Grab-and-Go Breakfast

If your mornings are hectic, you’re not alone—and that’s where bacon and sausage egg muffins come in. These protein-packed, handheld bites check all the boxes for a breakfast that’s quick, nutritious, and absolutely delicious. Here’s why they’ve become a favorite among meal preppers, busy parents, fitness enthusiasts, and anyone who loves a no-fuss start to the day.

Freshly baked bacon and sausage egg muffins in a muffin tin on a wooden table

1. Convenient and Portable

Bacon and sausage egg muffins are made in a standard muffin tin, which means they’re already portioned and easy to take on the go. No utensils required—just grab one (or two), wrap them in a napkin or foil, and you’ve got a warm breakfast ready to enjoy in minutes, whether you’re commuting, heading to school, or working from home.

2. High in Protein and Low in Carbs

Each muffin is loaded with eggs, sausage, and crispy bacon—ingredients that deliver a solid dose of protein and healthy fats. This combination not only keeps you full longer but also supports energy levels throughout the morning. And since they’re naturally low in carbs, these muffins are perfect for keto or low-carb meal plans.

3. Meal Prep Made Easy

Egg muffins store beautifully in the fridge or freezer, making them ideal for batch cooking. Spend just 30 minutes on Sunday and enjoy a full week of ready-made breakfasts. It’s the ultimate meal prep hack—saving time, money, and effort during busy weekdays.

4. Totally Customizable

One of the best things about egg muffins is their flexibility. Love veggies? Add spinach, mushrooms, or diced peppers. Want to keep it spicy? Try chorizo or jalapeños. Prefer a leaner version? Go with turkey sausage or skip the cheese. With endless variations, you’ll never get bored of breakfast again.

Ingredients You’ll Need for These Savory Breakfast Muffins

Making bacon and sausage egg muffins is simple, but the right combination of ingredients is what makes them truly flavorful, satisfying, and perfect for any morning routine. Whether you’re sticking to classic flavors or looking to customize, here’s everything you’ll need to create the perfect savory breakfast muffin.

1. Core Ingredients

These are the essential items you’ll need to make the base of your muffins:

Eggs – The foundation of the recipe. Use large eggs for the best consistency and protein boost.
Cooked Bacon – Crispy and chopped, bacon adds smokiness and crunch to each bite. Make sure it’s fully cooked before mixing.
Ground Sausage – Breakfast sausage (pork or turkey) brings savory flavor and extra protein. Cook it thoroughly and drain excess grease.
Shredded Cheese – Optional but highly recommended. Cheddar, mozzarella, or pepper jack adds gooeyness and rich taste.
Salt and Pepper – Season to taste. You can also add garlic powder, paprika, or onion powder for extra flavor.

2. Flavor Boosters and Add-Ins

To take your muffins to the next level, consider adding a mix of vegetables, herbs, or even spice:

Diced Bell Peppers – Add sweetness, crunch, and color.
Spinach or Kale – Great for a nutrient boost. Sauté and drain before using to avoid sogginess.
Mushrooms or Onions – Cook these first to release their moisture and bring out their umami flavor.
Fresh Herbs – Chopped parsley, chives, or basil can add freshness and depth.

3. Healthier Ingredient Swaps (Optional)

If you’re looking for a lighter or more diet-specific version, try these options:

Egg Whites Only – Lower fat, lower cholesterol option.
Turkey Bacon or Sausage – A leaner alternative without sacrificing flavor.
Dairy-Free Cheese or Milk – For those avoiding lactose or dairy altogether.
Plant-Based Sausage – A great vegetarian-friendly swap that still adds heartiness.

4. Essential Tools for the Recipe

Having the right equipment will make prep and cleanup easier:

Muffin Tin – Standard 12-cup muffin pan works best. You can also use mini muffin tins for bite-sized versions.
Non-Stick Spray or Silicone Liners – Prevent sticking and make cleanup quick.
Whisk or Mixing Bowl – To beat your eggs and evenly combine all ingredients.
Measuring Cups and Spoons – For accurate ingredient portions.

Step-by-Step Recipe: How to Make Bacon and Sausage Egg Muffins

Ready to make a batch of savory, protein-rich bacon and sausage egg muffins? This step-by-step guide walks you through the process—from prep to baking—so you can enjoy perfectly fluffy, flavorful muffins every time. Whether you’re meal prepping for the week or whipping up a fresh breakfast, these muffins are quick to assemble and even quicker to disappear!

Step 1: Preheat the Oven and Prep the Muffin Tin

Start by preheating your oven to 375°F (190°C). This temperature ensures your egg muffins bake evenly and set nicely without overcooking.

Grease your muffin tin with non-stick spray or line with silicone muffin cups to prevent sticking.
You can also use parchment liners, but avoid paper liners—they tend to stick to egg-based recipes.

Step 2: Cook the Bacon and Sausage

Before mixing your ingredients, cook the meats until browned and flavorful.

Bacon: Pan-fry or bake until crispy, then chop into small pieces.
Sausage: Brown ground sausage in a skillet, breaking it apart with a spatula. Drain excess grease to prevent soggy muffins.

Pro Tip: Let the cooked meats cool slightly before adding them to the egg mixture to avoid curdling the eggs.

Step 3: Whisk the Egg Mixture

In a large mixing bowl, crack and whisk together:

6–8 large eggs (or more, depending on your batch size)
Salt and pepper to taste
Optional: A splash of milk or cream for a creamier texture
Optional: Grated cheese (cheddar, mozzarella, or your favorite variety)

Make sure the eggs are well-beaten for an even bake.

Step 4: Fill the Muffin Cups

Distribute your cooked sausage and bacon evenly among the muffin tin cups. You can also add your desired veggies, herbs, or cheese at this stage.

Pour the egg mixture slowly into each cup, leaving a little space at the top (the eggs will puff up slightly).
Stir gently with a fork in each cup if you want an even mix of fillings.

Step 5: Bake to Perfection

Place the muffin tin in the oven and bake for 20–25 minutes, or until:

The egg muffins are fully set in the center
The tops are slightly golden and puffed
A toothpick inserted in the middle comes out clean

Let them cool in the pan for 5–10 minutes before removing. The muffins will slightly deflate as they cool—this is normal!

Storage, Reheating, and Meal Prep Tips

One of the biggest benefits of making bacon and sausage egg muffins is how well they hold up for future meals. Whether you’re planning ahead for busy mornings or looking to save time during the week, proper storage and reheating can keep your muffins tasting fresh and delicious. Here’s how to make the most of your batch with simple storage, reheating, and meal prep strategies.

1. How to Store Egg Muffins Properly

Once your muffins are fully cooled, it’s important to store them correctly to maintain flavor and texture.

In the Fridge:
Place muffins in an airtight container or wrap them individually in plastic wrap. They’ll stay fresh in the refrigerator for up to 4–5 days.
In the Freezer:
For longer storage, wrap each muffin tightly in plastic wrap or foil, then place them in a freezer-safe bag. Label the bag with the date and freeze for up to 2 months.

💡 Pro Tip: Use parchment paper between layers if stacking to prevent sticking.

2. Best Reheating Methods

Egg muffins reheat beautifully, especially when done right. Here are a few effective options:

Microwave (Quickest Option):
Place one muffin on a microwave-safe plate and heat for 30–45 seconds (from the fridge) or 60–90 seconds (from frozen). Cover with a paper towel to avoid drying out.
Oven or Toaster Oven:
Preheat to 350°F (175°C) and bake for 10–15 minutes, or until heated through. This method helps maintain texture, especially when reheating multiple muffins at once.
Air Fryer:
Heat at 320°F (160°C) for 5–7 minutes. This is perfect if you want a slightly crispy edge.

3. Meal Prep Tips for Busy Weeks

Planning ahead? Here’s how to streamline your mornings with smart meal prep:

Batch Cook on Sunday:
Double the recipe and make 12–24 muffins. Store some in the fridge for early-week use and freeze the rest for later.
Portion for Each Day:
Store muffins in meal prep containers with fruit, yogurt, or a low-carb wrap to create a complete breakfast on the go.
Flavor Variety:
Make half the batch with bacon and cheese, and the other half with sausage and veggies to mix up flavors throughout the week.

4. Bonus Tips for Maintaining Freshness

Let muffins cool fully before sealing them in containers to avoid moisture buildup.
Reheat gently to prevent rubbery texture—avoid overcooking!
Add fresh toppings (like avocado or hot sauce) after reheating for extra flavor and freshness.

Creative Variations and Healthy Swaps

One of the best things about bacon and sausage egg muffins is how endlessly adaptable they are. Whether you’re following a specific diet, cooking for picky eaters, or simply looking to try new flavors, these egg muffins can be customized in countless ways. From healthier swaps to bold new ingredient combos, here are some delicious and creative ideas to keep your breakfast routine exciting and satisfying.

1. Keto-Friendly Additions

Staying low-carb doesn’t mean you have to sacrifice flavor. Try these keto-approved ingredients:

Heavy Cream – Add a splash to your egg mixture for extra richness and a creamy texture.
Cheddar, Swiss, or Pepper Jack Cheese – Choose full-fat cheeses for added flavor and healthy fats.
Spinach, Kale, or Zucchini – Low-carb veggies that add nutrients without bulk.
Avocado Slices (on the side) – Not baked in, but perfect as a topping for added creaminess and healthy fats.

🧠 Tip: Avoid starchy veggies like potatoes or corn to keep it keto.

2. Vegetarian-Friendly Version

Want to go meatless without missing out on flavor? These swaps keep your muffins just as hearty:

Sautéed Mushrooms – Earthy and rich, they add a satisfying meat-like texture.
Sun-Dried Tomatoes – Packed with umami and a slightly sweet, tangy kick.
Broccoli, Peppers, or Onions – Colorful, crunchy, and nutrient-dense.
Plant-Based Sausage or Bacon – A great alternative if you’re avoiding animal products.

🌱 Pair with a sprinkle of feta or goat cheese for extra flavor.

3. Spice It Up: Bold & Flavorful Options

If you love heat or bolder flavors, try spicing things up with these ingredients:

Jalapeños or Green Chiles – Dice and add for a subtle kick.
Hot Italian Sausage – Swaps easily for regular sausage and adds loads of flavor.
Crushed Red Pepper or Cayenne – Just a pinch goes a long way.
Taco-Inspired Seasoning – Try cumin, paprika, or chili powder for a Tex-Mex twist.

🔥 Serve with salsa or hot sauce for an extra punch.

4. Low-Fat or Lightened-Up Options

For a leaner, lower-calorie version, consider these healthy swaps:

Egg Whites or Egg Substitute – Use all egg whites or a mix of whole eggs and whites.
Turkey Bacon or Turkey Sausage – Leaner than pork and still full of flavor.
Low-Fat Cheese – Choose reduced-fat cheddar or skip cheese altogether.
Non-Stick Silicone Liners – Reduce the need for added oils or sprays.

💡 Still big on protein, but with fewer calories and fat.

5. Kid-Friendly Flavors

Make egg muffins more appealing for little ones with these family-friendly combos:

Ham and Cheese – Mild, classic flavors kids love.
Mild Breakfast Sausage with Cheddar – No spice, just comfort.
Hidden Veggies – Finely chop carrots, spinach, or bell peppers and mix them in.
Mini Muffin Tins – Make smaller, bite-sized versions for kid-sized hands and appetites.

🧁 Serve with a small side of fruit or toast to round out the meal.